gd2shoe, you sound like you know a lot beekeeping or are well-read.
So we make the honey extractor run on MeseCons and fix the issues you’ve laid out where it uses frames. Then use a low-tech method that is maybe slower or yields less or involves more manual labor to operate.
I’m OK with candles burning out, but they should also offer something more unique than torches if they are to be included. I haven’t figured this one out.
I think your suggestions for the other bee related items are great. Bees definitely need more work and can be expanded upon. Just make sure the additions have uses or perhaps we can add that later or leave them as crafting materials for other things. I hope that helps answer some of your questions?